Handbrake: crop + passthru subtitles result in bad scaling

I am in the process of ripping my DVDs to my Plex library and everything is fine, except for the way subtitles look when i have to crop in Handbrake. It skews the text and its often placed too high.

See pictures.

[Attachment 40907 - Click to enlarge]

[Attachment 40908 - Click to enlarge]

This is how it look if you play the dvd:

[Attachment 40909 - Click to enlarge]

Is there a way to fix this issue? any software that let me edit passtrhru subtitles height and scaling.

Thanks in advance